3HPH Transferase date Jun 04, 2009
title Closed Tetramer Of Visna Virus Integrase (Residues 1-219) In With Ledgf Ibd
authors S.Hare, J.Wang, P.Cherepanov
compound source
Molecule: Integrase
Chain: A, B, C, D
Fragment: N-Terminal And Catalytic Domains, Unp Residues 92
Synonym: In
Engineered: Yes
Organism_scientific: Maedi Visna Virus
Organism_common: Mvv
Organism_taxid: 36374
Strain: Kv1772
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pc2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdf-Duet1

Molecule: Pc4 And Sfrs1-Interacting Protein
Chain: E, F, G, H
Fragment: Integrase Binding Domain, Unp Residues 348-435
Synonym: Lens Epithelium-Derived Growth Factor, Transcripti Coactivator P75p52, Dense Fine Speckles 70 Kda Protein, Df Associated Antigen Kw-7;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dfs70, Ledgf, Psip1, Psip2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pc2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pes
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.870 83.150 115.300 90.00 101.96 90.00
method X-Ray Diffractionresolution 2.64 Å
ligand GOL, PO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for functional tetramerization of lentiviral integrase., Hare S, Di Nunzio F, Labeja A, Wang J, Engelman A, Cherepanov P, PLoS Pathog. 2009 Jul;5(7):e1000515. Epub 2009 Jul 17. PMID:19609359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (3hph.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 3HPH
  • CSU: Contacts of Structural Units for 3HPH
  • Likely Quarternary Molecular Structure file(s) for 3HPH
  • Structure Factors (847 Kb)
  • Retrieve 3HPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HPH from S2C, [Save to disk]
  • Re-refined 3hph structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HPH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HPH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hph_H] [3hph_D] [3hph_B] [3hph_C] [3hph] [3hph_A] [3hph_E] [3hph_G] [3hph_F]
  • SWISS-PROT database: [P35956] [O75475]
  • Domain organization of [POL_VILVK] [PSIP1_HUMAN] by SWISSPFAM
  • Other resources with information on 3HPH
  • Community annotation for 3HPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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