3HU3 Transport Protein date Jun 12, 2009
title Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
authors W.K.Tang
compound source
Molecule: Transitional Endoplasmic Reticulum Atpase
Chain: A, B
Fragment: Residues 1-481
Synonym: Ter Atpase, 15s Mg(2+)-Atpase P97 Subunit, Valosin Containing Protein, Vcp;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Human
Gene: P97, Vcp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
symmetry Space Group: H 3
R_factor 0.171 R_Free 0.193
length a length b length c angle alpha angle beta angle gamma
134.206 134.206 182.890 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand AGS, MG enzyme
A, B

Primary referenceA novel ATP-dependent conformation in p97 N-D1 fragment revealed by crystal structures of disease-related mutants., Tang WK, Li D, Li CC, Esser L, Dai R, Guo L, Xia D, EMBO J. 2010 May 28. PMID:20512113
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (3hu3.pdb1.gz) 440 Kb
  • LPC: Ligand-Protein Contacts for 3HU3
  • CSU: Contacts of Structural Units for 3HU3
  • Structure Factors (1371 Kb)
  • Retrieve 3HU3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HU3 from S2C, [Save to disk]
  • Re-refined 3hu3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HU3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HU3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HU3, from MSDmotif at EBI
  • Fold representative 3hu3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hu3_A] [3hu3_B] [3hu3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3HU3: [AAA] [CDC48_2] [CDC48_N ] by SMART
  • Other resources with information on 3HU3
  • Community annotation for 3HU3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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