3IJ5	Hydrolase	date	Aug 03, 2009
title	1.95 Angstrom Resolution Crystal Structure Of 3-Deoxy-D-Mann Octulosonate 8-Phosphate Phosphatase From Yersinia Pestis
authors	G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papa W.F.Anderson, Center For Structural Genomics Of Infectious D (Csgid)
compound		source
Molecule: 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Phosphat Chain: A, B, C, D Synonym: Kdo 8-P Phosphatase Ec: 3.1.3.45 Engineered: Yes		Organism_scientific: Yersinia Pestis Organism_taxid: 214092 Strain: Co92 Gene: Kdsc, Np_407035, Y0150, Ypo3578, Yp_3833 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcsg7
symmetry	Space Group: C 1 2 1	R_factor 0.163 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.597 77.941 96.881 90.00 120.05 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	CL	enzyme	Hydrolase E.C.3.1.3.45 BRENDA
Gene	NP ; YP
Gene Ontology	Chain Function Process Component A, D, C, B 3-deoxy-manno-octulosonate-8...

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk] Biological Unit Coordinates (3ij5.pdb1.gz) 127 Kb Biological Unit Coordinates (3ij5.pdb2.gz) 252 Kb LPC: Ligand-Protein Contacts for 3IJ5 CSU: Contacts of Structural Units for 3IJ5 Structure Factors (1073 Kb) Retrieve 3IJ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IJ5 from S2C, [Save to disk] Re-refined 3ij5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IJ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IJ5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IJ5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ij5_C] [3ij5_D] [3ij5_B] [3ij5_A] [3ij5] SWISS-PROT database: [Q8ZB47] Domain organization of [KDSC_YERPE] by SWISSPFAM

Other resources with information on 3IJ5

Community annotation for 3IJ5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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