3IL8 Cytokine date Dec 07, 1990
title Crystal Structure Of Interleukin 8: Symbiosis Of Nmr And Crystallography
authors E.T.Baldwin, I.T.Weber, R.St Charles, J.C.Xuan, E.Appella, M.Yam K.Matsushima, B.F.P.Edwards, G.M.Clore, A.M.Gronenborn, A.Wloda
compound source
Molecule: Interleukin-8
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Neutrophils
symmetry Space Group: P 31 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.300 40.300 90.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1ICW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of interleukin 8: symbiosis of NMR and crystallography., Baldwin ET, Weber IT, St Charles R, Xuan JC, Appella E, Yamada M, Matsushima K, Edwards BF, Clore GM, Gronenborn AM, et al., Proc Natl Acad Sci U S A 1991 Jan 15;88(2):502-6. PMID:1988949
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (3il8.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 3IL8
  • Likely Quarternary Molecular Structure file(s) for 3IL8
  • Retrieve 3IL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IL8 from S2C, [Save to disk]
  • View 3IL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IL8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3IL8, from MSDmotif at EBI
  • Genome occurence of 3IL8's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3il8__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 3il8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3il8_A] [3il8]
  • SWISS-PROT database: [P10145]
  • Domain organization of [IL8_HUMAN] by SWISSPFAM
  • Domain found in 3IL8: [SCY ] by SMART
  • Other resources with information on 3IL8
  • Community annotation for 3IL8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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