3J2I Ribosomal Protein, Signaling Protein date Oct 04, 2012
title Structure Of Late Pre-60s Ribosomal Subunits With Nuclear Ex Factor Arx1 Bound At The Peptide Exit Tunnel
authors B.Bradatsch, C.Leidig, S.Granneman, M.Gnaedig, D.Tollervey, B.Boe R.Beckmann, E.Hurt
compound source
Molecule: Eukaryotic Translation Initiation Factor 6
Chain: B
Synonym: Eif-6
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proliferation-Associated Protein 2g4
Chain: A
Synonym: Cell Cycle Protein P38-2g4 Homolog, Hg4-1, Erbb3-B Protein 1, Ebp1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 11.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel., Bradatsch B, Leidig C, Granneman S, Gnadig M, Tollervey D, Bottcher B, Beckmann R, Hurt E, Nat Struct Mol Biol. 2012 Nov 11. doi: 10.1038/nsmb.2438. PMID:23142978
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3j2i.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3j2i.pdb2.gz) 35 Kb
  • CSU: Contacts of Structural Units for 3J2I
  • Retrieve 3J2I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J2I from S2C, [Save to disk]
  • View 3J2I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J2I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J2I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j2i_A] [3j2i_B] [3j2i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3J2I: [eIF6 ] by SMART
  • Other resources with information on 3J2I
  • Community annotation for 3J2I at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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