3J4R Transferase date Sep 25, 2013
title Pseudo-Atomic Model Of The Akap18-Pka Complex In A Linear Co Derived From Electron Microscopy
authors S.L.Reichow, T.Gonen
compound source
Molecule: A-Kinase Anchor Protein 18
Chain: A
Fragment: See Remark 999
Synonym: Akap18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf-9

Molecule: Camp-Dependent Protein Kinase Type II-Alpha Regul Subunit;
Chain: B, C
Synonym: Protein Kinase, Camp Dependent Regulatory, Type II Isoform Cra_b, Camp-Dependent Protein Kinase Type II-Alpha Chain, Camp-Dependent Protein Kinase Type II-Alpha Regulato Subunit;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Prkar2a, Mcg_16488
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15a

Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: D, E
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Prkaca, Pkaca
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 35.00 Å
ligand
enzyme Transferase E.C.2.7.11.11 BRENDA
Gene MCG
Gene
Ontology
ChainFunctionProcessComponent
A


C, B


D, E


Primary referenceIntrinsic disorder within an AKAP-protein kinase A complex guides local substrate phosphorylation., Smith FD, Reichow SL, Esseltine JL, Shi D, Langeberg LK, Scott JD, Gonen T, Elife. 2013 Nov 5;2(0). pii: e01319. doi: 10.7554/eLife.01319. PMID:24192038
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (3j4r.pdb1.gz) 252 Kb
  • CSU: Contacts of Structural Units for 3J4R
  • Retrieve 3J4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J4R from S2C, [Save to disk]
  • View 3J4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J4R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J4R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j4r_E] [3j4r_D] [3j4r] [3j4r_A] [3j4r_B] [3j4r_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3J4R: [RIIa] [S_TK_X] [S_TKc] [cNMP ] by SMART
  • Other resources with information on 3J4R
  • Community annotation for 3J4R at PDBWiki (http://pdbwiki.org)

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