3J5M	Viral Protein Immune System	date	Oct 26, 2013
title	Cryo-Em Structure Of The Bg505 Sosip.664 Hiv-1 Env Trimer Wi Fabs
authors	D.Lyumkis, J.P.Julien, I.A.Wilson, A.B.Ward
compound		source
Molecule: Bg505 Sosip Gp120 Chain: A, E, I Fragment: Unp Residues 30-504 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Env Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek
Molecule: Bg505 Sosip Gp41 Chain: B, F, J Fragment: See Remark 999 Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Env Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek
Molecule: Pgv04 Light Chain Chain: C, G, K Fragment: Fab Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek
Molecule: Pgv04 Heavy Chain Chain: D, H, L Fragment: Fab Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	5.80 Å
note	3J5M (Molecule of the Month:pdb169)
Gene Ontology	Chain Function Process Component A, I, E
Primary reference	Cryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer., Lyumkis D, Julien JP, de Val N, Cupo A, Potter CS, Klasse PJ, Burton DR, Sanders RW, Moore JP, Carragher B, Wilson IA, Ward AB, Science. 2013 Oct 31. PMID:24179160

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk] Biological Unit Coordinates (3j5m.pdb1.gz) 352 Kb CSU: Contacts of Structural Units for 3J5M Retrieve 3J5M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3J5M from S2C, [Save to disk]

View 3J5M in 3D

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Visual 3D analysis of 3J5M

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3J5M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3j5m_H] [3j5m_B] [3j5m_E] [3j5m_L] [3j5m_A] [3j5m_D] [3j5m_G] [3j5m_C] [3j5m_K] [3j5m_J] [3j5m_F] [3j5m_I] [3j5m] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3J5M: [IG_like] [IGv ] by SMART

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