3J5S Ribosome Translation date Nov 15, 2013
title Etta Binds To Ribosome Exit Site And Regulates Translation B Restricting Ribosome And Trna Dynamics
authors Y.Hashem
compound source
Molecule: 16s Ribosomal Rna
Chain: B
Fragment: See Remark 999
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 23s Ribosomal Rna
Chain: A
Fragment: See Remark 999
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: P-Site Trna Fmet
Chain: E
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Energy-Dependent Translational Throttle A (Etta)
Chain: D
Synonym: Abc Transporter Atp-Binding Protein Yjjk
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 511145
Strain: K12 Substr. Mg1655
Gene: Yjjk
Expression_system: Escherichia Coli
Expression_system_taxid: 511145
Expression_system_strain: K12 Substr. Mg1655
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad

Molecule: 50s Ribosomal Protein L1
Chain: F
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L5
Chain: G
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L33
Chain: H
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 30s Ribosomal Protein S7
Chain: I
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.50 Å
Gene
Ontology
ChainFunctionProcessComponent
D


F


G


H


I


Primary referenceEttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics., Chen B, Boel G, Hashem Y, Ning W, Fei J, Wang C, Gonzalez RL Jr, Hunt JF, Frank J, Nat Struct Mol Biol. 2014 Jan 5. doi: 10.1038/nsmb.2741. PMID:24389465
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (3j5s.pdb1.gz) 255 Kb
  • CSU: Contacts of Structural Units for 3J5S
  • Retrieve 3J5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J5S from S2C, [Save to disk]
    • View 3J5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J5S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J5S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j5s_D] [3j5s_B] [3j5s] [3j5s_H] [3j5s_G] [3j5s_E] [3j5s_A] [3j5s_F] [3j5s_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3J5S: [AAA ] by SMART
    • Other resources with information on 3J5S
  • Community annotation for 3J5S at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science