3J5Y Translation Rna date Nov 21, 2013
title Structure Of The Mammalian Ribosomal Pre-Termination Complex Associated With Erf1-Erf3-Gdpnp
authors A.Des Georges, Y.Hashem, A.Unbehaun, R.A.Grassucci, D.Taylor, C.U.T.Hellen, T.V.Pestova, J.Frank
compound source
Molecule: Eukaryotic Peptide Chain Release Factor Subunit 1
Chain: A
Fragment: Unp Residues 7-420
Synonym: Eukaryotic Release Factor 1, Erf1, Protein Cl1, Tb
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Etf1, Erf1, Rf1, Sup45l1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Eukaryotic Peptide Chain Release Factor Gtp-Bindi Erf3a;
Chain: B
Fragment: Unp Residues 69-496
Synonym: Eukaryotic Peptide Chain Release Factor Subunit 3a G1 To S Phase Transition Protein 1 Homolog;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gspt1, Erf3a
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: 5'-R(Apupupgpupapapapapa)-3'
Chain: C
Engineered: Yes
Other_details: Messenger Rna

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Trna-Leu
Chain: D

Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.70 Å
note 3J5Y supersedes 3J2K
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of the mammalian ribosomal pre-termination complex associated with eRF1*eRF3*GDPNP., des Georges A, Hashem Y, Unbehaun A, Grassucci RA, Taylor D, Hellen CU, Pestova TV, Frank J, Nucleic Acids Res. 2013 Dec 11. PMID:24335085
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (3j5y.pdb1.gz) 150 Kb
  • CSU: Contacts of Structural Units for 3J5Y
  • Retrieve 3J5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J5Y from S2C, [Save to disk]
  • View 3J5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J5Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J5Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j5y_D] [3j5y_C] [3j5y] [3j5y_B] [3j5y_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3J5Y: [eRF1_1 ] by SMART
  • Other resources with information on 3J5Y
  • Community annotation for 3J5Y at PDBWiki (http://pdbwiki.org)

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