3J7G Virus date Jun 24, 2014
title Electron Cryo-Microscopy Of Human Papillomavirus 16 And H16. Fragments
authors H.Lee, S.Hafenstein
compound source
Molecule: L1
Chain: A, B, C, D, E
Fragment: Unp Residues 47-500
Synonym: L1 Protein, Major Capsid Protein L1
 Organism_scientific: Human Papillomavirus Type 16
Organism_taxid: 333760
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 13.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceA CryoEM study identifies the complete H16.V5 epitope and reveals global conformational changes initiated by binding of the neutralizing antibody fragment., Lee H, Brendle SA, Bywaters SM, Guan J, Ashley RE, Yoder JD, Makhov AM, Conway JF, Christensen ND, Hafenstein S, J Virol. 2014 Nov 12. pii: JVI.02898-14. PMID:25392224
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • Biological Unit Coordinates (3j7g.pdb1.gz) 19580 Kb
  • CSU: Contacts of Structural Units for 3J7G
  • Retrieve 3J7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J7G from S2C, [Save to disk]
    • View 3J7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J7G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J7G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j7g_D] [3j7g_B] [3j7g_A] [3j7g_E] [3j7g] [3j7g_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3J7G
  • Community annotation for 3J7G at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science