3JAV Transport Protein date Jun 30, 2015
title Structure Of Full-Length Ip3r1 Channel In The Apo-State Dete Single Particle Cryo-Em
authors G.Fan, M.L.Baker, Z.Wang, M.R.Baker, P.A.Sinyagovskiy, W.Chiu, S.J I.I.Serysheva
compound source
Molecule: Inositol 1,4,5-Trisphosphate Receptor Type 1
Chain: A, B, C, D
Synonym: Ip3 Receptor Isoform 1, Ip-3-R, Ip3r 1, Insp3r1, T Inositol 1,4,5-Trisphosphate Receptor, Type 1 Insp3 Recepto
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • inositol 1,4,5-trisphosphate...
  • inositol 1,4,5-trisphosphate...


  • Primary referenceGating machinery of InsPR channels revealed by electron cryomicroscopy., Fan G, Baker ML, Wang Z, Baker MR, Sinyagovskiy PA, Chiu W, Ludtke SJ, Serysheva II, Nature. 2015 Oct 12. doi: 10.1038/nature15249. PMID:26458101
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (579 Kb) [Save to disk]
  • Biological Unit Coordinates (3jav.pdb1.gz) 574 Kb
  • CSU: Contacts of Structural Units for 3JAV
  • Retrieve 3JAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JAV from S2C, [Save to disk]
  • View 3JAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JAV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jav_D] [3jav] [3jav_C] [3jav_A] [3jav_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JAV: [MIR ] by SMART
  • Other resources with information on 3JAV
  • Community annotation for 3JAV at PDBWiki (http://pdbwiki.org)

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