3JBJ Structural Protein date Sep 03, 2015
title Cryo-Em Reconstruction Of F-Actin
authors L.Y.Kim, P.M.Thompson, H.T.Lee, M.Pershad, S.L.Campbell, G.M.Alus
compound source
Molecule: Actin, Alpha Skeletal Muscle
Chain: A, B
Synonym: Alpha-Actin-1
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Skeletal Muscle
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.60 Å
ligand ADP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Structural Basis of Actin Organization by Vinculin and Metavinculin., Kim LY, Thompson PM, Lee HT, Pershad M, Campbell SL, Alushin GM, J Mol Biol. 2016 Jan 16;428(1):10-25. doi: 10.1016/j.jmb.2015.09.031. Epub 2015, Oct 20. PMID:26493222
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3jbj.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3JBJ
  • CSU: Contacts of Structural Units for 3JBJ
  • Retrieve 3JBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JBJ from S2C, [Save to disk]
    • View 3JBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JBJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jbj] [3jbj_B] [3jbj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JBJ: [ACTIN ] by SMART
    • Other resources with information on 3JBJ
  • Community annotation for 3JBJ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science