3JCK | Hydrolase | date | Dec 20, 2015 |
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title | Structure Of The Yeast 26s Proteasome Lid Sub-Complex | ||||||||||||||||||||||||||||||||||||||||||
authors | M.A.Herzik Jr., C.M.Dambacher, E.J.Worden, A.Martin, G.C.Lander | ||||||||||||||||||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 26s Proteasome Regulatory Subunit Rpn3 Chain: A Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Cellular_location: Cytoplasm Gene: Rpn3, Sun2, Yer021w Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet, Pcola, Pacyc | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 26s Proteasome Regulatory Subunit Rpn5 Chain: B Synonym: Proteasome Non-Atpase Subunit 5 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Cellular_location: Cytoplasm Gene: Rpn5, Nas5, Ydl147w, D1572 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet, Pcola, Pacyc | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 26s Proteasome Regulatory Subunit Rpn6 Chain: C Synonym: Proteasome Non-Atpase Subunit 4 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Cellular_location: Cytoplasm Gene: Rpn6, Nas4, Ydl097c, D2381 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet, Pcola, Pacyc | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 26s Proteasome Regulatory Subunit Rpn7 Chain: D Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Cellular_location: Cytoplasm Gene: Rpn7, Ypr108w, P8283.8 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet, Pcola, Pacyc | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 26s Proteasome Regulatory Subunit Rpn8 Chain: E Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Cellular_location: Cytoplasm Gene: Rpn8, Yor261c, O5360 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet, Pcola, Pacyc | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 26s Proteasome Regulatory Subunit Rpn9 Chain: F Synonym: Proteasome Non-Atpase Subunit 7 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Cellular_location: Cytoplasm Gene: Rpn9, Nas7, Ydr427w, D9461.14 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet, Pcola, Pacyc | ||||||||||||||||||||||||||||||||||||||||||
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase Rpn11 Chain: G Synonym: 26s Proteasome Regulatory Subunit Rpn11, Protein M Ec: 3.4.19.12 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Cellular_location: Cytoplasm Gene: Rpn11, Mpr1, Yfr004w Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet, Pcola, Pacyc | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 26s Proteasome Regulatory Subunit Rpn12 Chain: H Synonym: Nuclear Integrity Protein 1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Cellular_location: Cytoplasm Gene: Rpn12, Nin1, Yfr052w Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet, Pcola, Pacyc | ||||||||||||||||||||||||||||||||||||||||||
Molecule: 26s Proteasome Complex Subunit Sem1 Chain: I Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Cellular_location: Cytoplasm Gene: Sem1, Dsh1, Ydr363w-A Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet, Pcola, Pacyc | ||||||||||||||||||||||||||||||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 3.50 Å | ||||||||||||||||||||||||||||||||||||||||
ligand | ZN | enzyme | Hydrolase E.C.3.4.19.12 BRENDA | ||||||||||||||||||||||||||||||||||||||||
Gene Ontology |
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Primary reference | Atomic structure of the 26S proteasome lid reveals the mechanism of deubiquitinase inhibition., Dambacher CM, Worden EJ, Herzik MA, Martin A, Lander GC, Elife. 2016 Jan 8;5. pii: e13027. doi: 10.7554/eLife.13027. PMID:26744777 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |