3JCU Membrane Protein date Mar 10, 2016
title Cryo-Em Structure Of Spinach Psii-Lhcii Supercomplex At 3.2 Resolution
authors X.P.Wei, X.Z.Zhang, X.D.Su, P.Cao, X.Y.Liu, M.Li, W.R.Chang, Z.F.Li
compound source
Molecule: Photosystem II Protein D1
Chain: A, a
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Cp47 Reaction Center Protein
Chain: B, b

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Cp43 Reaction Center Protein
Chain: C, c

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II D2 Protein
Chain: D, d

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Cytochrome B559 Subunit Alpha
Chain: E, e

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Cytochrome B559 Subunit Beta
Chain: F, f

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Chlorophyll A-B Binding Protein, Chloroplastic
Chain: G, N, Y, g, n, y

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Reaction Center Protein H
Chain: H, h

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein Photosystem II Reaction Center Protein I
Chain: I, I

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Reaction Center Protein J
Chain: J, j

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Reaction Center Protein K
Chain: K, k

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein Photosystem II Reaction Center Protein L
Chain: L, l

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Reaction Center Protein M
Chain: M, m

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Oxygen-Evolving Enhancer Protein 1, Chloroplastic
Chain: O, o

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Oxygen-Evolving Enhancer Protein 2, Chloroplastic
Chain: P, p

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Oxygen-Evolving Enhancer Protein 3, Chloroplastic
Chain: Q, q

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Chlorophyll A-B Binding Protein 29 Kd (Cp29)
Chain: R, r

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Chlorophyll A-B Binding Protein 26 Kd (Cp26)
Chain: S, s

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Reaction Center Protein Tc
Chain: T, t

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Reaction Center Tn Protein
Chain: U, u

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Reaction Center W Protein, Chlorop
Chain: W, w

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Reaction Center X Protein
Chain: X, x

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem II Reaction Center Protein Z
Chain: Z, z

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
337.500 337.500 216.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å
ligand BCR, BCT, CHL, CL, CLA, DGD, FE2, HEM, LHG, LMG, LUT, NEX, OEX, PHO, PL9, SQD, XAT enzyme
subcellular loc. Membrane localization by OPM: Thylakoid membrane
thylakoid space side
stroma side
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


H


I


J


K


L


M


N, Y, y, g, G, n


O


P


Q


S, s


T


W


X


Z


a


b


c


d


e, f


j, k, t, z, w, h, i, m, l


o


q, p


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1710 Kb) [Save to disk]
  • Biological Unit Coordinates (3jcu.pdb1.gz) 1570 Kb
  • LPC: Ligand-Protein Contacts for 3JCU
  • CSU: Contacts of Structural Units for 3JCU
  • Retrieve 3JCU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JCU from S2C, [Save to disk]
  • View 3JCU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JCU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 3jcu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jcu_O] [3jcu_p] [3jcu_H] [3jcu_U] [3jcu_Q] [3jcu_J] [3jcu_e] [3jcu_K] [3jcu_Z] [3jcu_t] [3jcu_T] [3jcu_B] [3jcu_o] [3jcu_f] [3jcu_C] [3jcu_q] [3jcu_s] [3jcu_A] [3jcu_G] [3jcu_F] [3jcu_X] [3jcu_w] [3jcu_x] [3jcu_z] [3jcu_R] [3jcu_c] [3jcu_m] [3jcu_Y] [3jcu_n] [3jcu_N] [3jcu_E] [3jcu_a] [3jcu_S] [3jcu_g] [3jcu_y] [3jcu_j] [3jcu_h] [3jcu_L] [3jcu_P] [3jcu_k] [3jcu_u] [3jcu] [3jcu_l] [3jcu_M] [3jcu_W] [3jcu_D] [3jcu_r] [3jcu_d] [3jcu_b] [3jcu_I] [3jcu_i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3JCU
  • Community annotation for 3JCU at PDBWiki (http://pdbwiki.org)

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