3JQW Cell Adhesion date Sep 08, 2009
title Crystal Structure Of Clostridium Histolyticum Colh Collagena Collagen-Binding Domain 3 At 2 Angstrom Resolution In Prese Calcium
authors J.Sakon, S.T.L.Philominathan, O.Matsushita, R.Bauer
compound source
Molecule: Colh Protein
Chain: A, B, C
Fragment: Collagen Binding Domain
Synonym: Collagenase
Ec: 3.4.24.3
Engineered: Yes
 Organism_scientific: Clostridium Histolyticum
Organism_taxid: 1498
Gene: Colh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.001 64.180 95.375 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA enzyme Hydrolase E.C.3.4.24.3 BRENDA
Primary referenceStructural comparison of ColH and ColG collagen-binding domains from Clostridium histolyticum., Bauer R, Wilson JJ, Philominathan ST, Davis D, Matsushita O, Sakon J, J Bacteriol. 2012 Nov 9. PMID:23144249
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3jqw.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (3jqw.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (3jqw.pdb3.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 3JQW
  • CSU: Contacts of Structural Units for 3JQW
  • Structure Factors (386 Kb)
  • Retrieve 3JQW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JQW from S2C, [Save to disk]
  • Re-refined 3jqw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3JQW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JQW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JQW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jqw] [3jqw_A] [3jqw_B] [3jqw_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3JQW
  • Community annotation for 3JQW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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