3JRU Hydrolase date Sep 08, 2009
title Crystal Structure Of Leucyl Aminopeptidase (Pepa) From Xoo08 Xanthomonas Oryzae Pv. Oryzae Kacc10331
authors S.Natarajan, K.H.Huynh, L.W.Kang
compound source
Molecule: Probable Cytosol Aminopeptidase
Chain: B, A
Synonym: Leucine Aminopeptidase, Lap, Leucyl Aminopeptidase
Ec: 3.4.11.1
Engineered: Yes
Organism_scientific: Xanthomonas Oryzae Pv. Oryzae
Organism_taxid: 64187
Strain: Kacc10331
Gene: Pepa, Xoo0834
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 3
R_factor 0.146 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.126 152.126 152.126 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA, CO3, ZN enzyme Hydrolase E.C.3.4.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (3jru.pdb1.gz) 458 Kb
  • LPC: Ligand-Protein Contacts for 3JRU
  • CSU: Contacts of Structural Units for 3JRU
  • Structure Factors (569 Kb)
  • Retrieve 3JRU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JRU from S2C, [Save to disk]
  • Re-refined 3jru structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JRU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JRU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JRU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jru_B] [3jru_A] [3jru]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3JRU
  • Community annotation for 3JRU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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