3JWN Protein Binding Cell Adhesion date Sep 18, 2009
title Complex Of Fimc, Fimf, Fimg And Fimh
authors I.Le Trong, P.Aprikian, R.E.Stenkamp, E.V.Sokurenko
compound source
Molecule: Chaperone Protein Fimc
Chain: C, I
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: B4316, Fimc, Jw4279
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b Based Ptipkb91

Molecule: Protein Fimf
Chain: E, F, K, L
Fragment: Unp Residues 23-176
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: B4318, Fimf, Jw4281
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Protein Fimg
Chain: G, M
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: B4319, Fimg, Jw4282
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Fimh Protein
Chain: H, N
Fragment: Unp Residues 25-303
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 488477
Strain: F18
Gene: Ecp_4655, Fimh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: H 3 2
R_factor 0.244 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
216.025 216.025 532.072 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.69 Å
ligand GOL enzyme
Gene ECP
Gene
Ontology
ChainFunctionProcessComponent
C, I


F, K, E, L


M, G


N, H


Primary referenceStructural basis for mechanical force regulation of the adhesin FimH via finger trap-like beta sheet twisting., Le Trong I, Aprikian P, Kidd BA, Forero-Shelton M, Tchesnokova V, Rajagopal P, Rodriguez V, Interlandi G, Klevit R, Vogel V, Stenkamp RE, Sokurenko EV, Thomas WE, Cell. 2010 May 14;141(4):645-55. PMID:20478255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (3jwn.pdb1.gz) 140 Kb
  • Biological Unit Coordinates (3jwn.pdb2.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 3JWN
  • CSU: Contacts of Structural Units for 3JWN
  • Structure Factors (2027 Kb)
  • Retrieve 3JWN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JWN from S2C, [Save to disk]
  • Re-refined 3jwn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JWN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JWN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JWN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jwn_C] [3jwn_F] [3jwn_K] [3jwn_E] [3jwn_G] [3jwn_N] [3jwn_L] [3jwn_M] [3jwn_H] [3jwn_I] [3jwn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3JWN
  • Community annotation for 3JWN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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