3JYM Isomerase date Sep 22, 2009
title Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
authors O.Dym, A.Breiman, Israel Structural Proteomics Center (Ispc)
compound source
Molecule: Fk506-Binding Protein (Fkbp) From Wheat
Chain: A, B
Engineered: Yes
Organism_scientific: Triticum Aestivum
Organism_common: Wheat
Organism_taxid: 4565
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.270 R_Free 0.343
crystal
cell
length a length b length c angle alpha angle beta angle gamma
186.956 31.012 68.978 90.00 93.59 90.00
method X-Ray Diffractionresolution 2.28 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the three FK506 binding protein domains of wheat FKBP73: evidence for a unique wFK73_2 domain., Unger T, Dym O, Albeck S, Jacobovitch Y, Bernehim R, Marom D, Pisanty O, Breiman A, J Struct Funct Genomics. 2010 Jun;11(2):113-23. Epub 2010 Mar 20. PMID:20306145
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3jym.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (3jym.pdb2.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3JYM
  • Structure Factors (552 Kb)
  • Retrieve 3JYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JYM from S2C, [Save to disk]
  • Re-refined 3jym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JYM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JYM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jym_A] [3jym_B] [3jym]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3JYM
  • Community annotation for 3JYM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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