3KDJ Hydrolase Hormone Receptor date Oct 23, 2009
title Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
authors P.Yin, H.Fan, Q.Hao, X.Yuan, N.Yan
compound source
Molecule: Putative Uncharacterized Protein At5g46790
Chain: A
Fragment: Residues 20-221
Synonym: Pyl1
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: At5g46790
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b

Molecule: Protein Phosphatase 2c 56
Chain: B
Fragment: Residues 119-434
Synonym: Abi1, Atpp2c56, Protein Phosphatase 2c Abi1, Pp2c Protein Abscisic Acid-Insensitive 1;
Ec: 3.1.3.16
Engineered: Yes
Mutation: Yes

Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Abi1, At4g26080, F20b18.190
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.610 86.788 110.701 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand A8S, MN enzyme Hydrolase E.C.3.1.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein phosphatase inhibito...


  • B


    Primary referenceStructural insights into the mechanism of abscisic acid signaling by PYL proteins., Yin P, Fan H, Hao Q, Yuan X, Wu D, Pang Y, Yan C, Li W, Wang J, Yan N, Nat Struct Mol Biol. 2009 Dec;16(12):1230-6. Epub 2009 Nov 5. PMID:19893533
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (3kdj.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 3KDJ
  • CSU: Contacts of Structural Units for 3KDJ
  • Structure Factors (766 Kb)
  • Retrieve 3KDJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KDJ from S2C, [Save to disk]
  • Re-refined 3kdj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KDJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KDJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KDJ, from MSDmotif at EBI
  • Fold representative 3kdj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kdj_B] [3kdj_A] [3kdj]
  • SWISS-PROT database: [P49597] [Q8VZS8]
  • Domain organization of [P2C56_ARATH] [PYL1_ARATH] by SWISSPFAM
  • Domains found in 3KDJ: [PP2C_SIG] [PP2Cc ] by SMART
  • Other resources with information on 3KDJ
  • Community annotation for 3KDJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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