3KFO	Protein Transport	date	Oct 27, 2009
title	Crystal Structure Of The C-Terminal Domain From The Nuclear Complex Component Nup133 From Saccharomyces Cerevisiae
authors	P.Sampathkumar, J.B.Bonanno, S.Miller, K.Bain, M.Dickey, T.Gheyi, M.Rout, A.Sali, J.Phillips, U.Pieper, J.Fernandez-Martinez, J.D. S.Atwell, D.A.Thompson, J.S.Emtage, S.Wasserman, J.M.Sauder, S.K New York Sgx Research Center For Structural Genomics (Nysgx
compound		source
Molecule: Nucleoporin Nup133 Chain: A Fragment: C-Terminal Domain, Residues 881-1157 Synonym: Nuclear Pore Protein Nup133 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Nup133, Rat3, Ykr082w, Ykr402 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Codon+Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Bc-Psgx3(Bc); Modified Pet26b
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.433 52.678 76.674 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	GOL, MSE	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex., Sampathkumar P, Gheyi T, Miller SA, Bain KT, Dickey M, Bonanno JB, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sali A, Sauder JM, Burley SK, Proteins. 2011 Jan 4. doi: 10.1002/prot.22973. PMID:21365675

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (3kfo.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 3KFO CSU: Contacts of Structural Units for 3KFO Structure Factors (233 Kb) Retrieve 3KFO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KFO from S2C, [Save to disk] Re-refined 3kfo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KFO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KFO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KFO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kfo] [3kfo_A] SWISS-PROT database: [P36161] Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB. Domain organization of [NU133_YEAST] by SWISSPFAM

Other resources with information on 3KFO

Community annotation for 3KFO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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