OCA Atlas for 3KFU

3KFU

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

5MU, H2U, MG, PSU, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, D, B, A
E, H
F, I
G, J

Primary reference

Crystal structure of a transfer-ribonucleoprotein particle that promotes asparagine formation., Blaise M, Bailly M, Frechin M, Behrens MA, Fischer F, Oliveira CL, Becker HD, Pedersen JS, Thirup S, Kern D, EMBO J. 2010 Sep 15;29(18):3118-29. Epub 2010 Aug 17. PMID:20717102

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1391 Kb) [Save to disk]

Biological Unit Coordinates (3kfu.pdb1.gz) 1381 Kb

LPC: Ligand-Protein Contacts for 3KFU

CSU: Contacts of Structural Units for 3KFU

Structure Factors (1030 Kb)

Retrieve 3KFU in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3KFU from S2C, [Save to disk]

Re-refined 3kfu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KFU in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kfu] [3kfu_A] [3kfu_B] [3kfu_C] [3kfu_D] [3kfu_E] [3kfu_F] [3kfu_G] [3kfu_H] [3kfu_I] [3kfu_J] [3kfu_K] [3kfu_L] [3kfu_M] [3kfu_N]

SWISS-PROT database:

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