3KM5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, GOL, NO3, SO4 enzyme
Primary referenceSTRUCTURE DETERMINATION AND ANALYSIS OF A HEMOLYTIC GINGIPAIN ADHESIN DOMAIN FROM PORPHYROMONAS GINGIVALIS., Li N, Yun P, Nadkarni MA, Ghadikolaee NB, Nguyen KA, Lee M, Hunter N, Collyer CA, Mol Microbiol. 2010 Mar 10. PMID:20233299
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (3km5.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (3km5.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3KM5
  • CSU: Contacts of Structural Units for 3KM5
  • Structure Factors (2417 Kb)
  • Retrieve 3KM5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KM5 from S2C, [Save to disk]
  • Re-refined 3km5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KM5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3km5] [3km5_A] [3km5_B]
  • SWISS-PROT database:

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