OCA Atlas for 3KP0

3KP0

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

5AD, B12, Z98

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C, B, A
F, G, E, H

Primary reference

Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase., Wolthers KR, Levy C, Scrutton NS, Leys D, J Biol Chem. 2010 Apr 30;285(18):13942-50. Epub 2010 Jan 27. PMID:20106986

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (487 Kb) [Save to disk]

Biological Unit Coordinates (3kp0.pdb1.gz) 113 Kb

Biological Unit Coordinates (3kp0.pdb2.gz) 136 Kb

Biological Unit Coordinates (3kp0.pdb3.gz) 113 Kb

Biological Unit Coordinates (3kp0.pdb4.gz) 135 Kb

Biological Unit Coordinates (3kp0.pdb5.gz) 242 Kb

Biological Unit Coordinates (3kp0.pdb6.gz) 241 Kb

LPC: Ligand-Protein Contacts for 3KP0

CSU: Contacts of Structural Units for 3KP0

Structure Factors (4233 Kb)

Retrieve 3KP0 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3KP0 from S2C, [Save to disk]

Re-refined 3kp0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KP0 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kp0] [3kp0_A] [3kp0_B] [3kp0_C] [3kp0_D] [3kp0_E] [3kp0_F] [3kp0_G] [3kp0_H]

SWISS-PROT database: [Q8VPJ5] [Q8VPJ6]

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