3KUX Oxidoreductase date Nov 28, 2009
title Structure Of The Ypo2259 Putative Oxidoreductase From Yersin
authors S.M.Anderson, Z.Wawrzak, E.Gordon, K.Kwon, A.Edwards, A.Savchenko W.F.Anderson, Center For Structural Genomics Of Infectious D Center For Structural Genomics Of Infectious Diseases (Csgi
compound source
Molecule: Putative Oxidoreductase
Chain: A
Synonym: Putative Uncharacterized Protein
Engineered: Yes
 Organism_scientific: Yersinia Pestis
Organism_taxid: 632
Strain: Co92
Gene: Mvim4, Y2101, Ypo2259, Yp_2055
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ripl
symmetry Space Group: P 65 2 2
R_factor 0.199 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.550 97.550 172.510 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand CL, MSE enzyme
Gene YP
Gene
Ontology
ChainFunctionProcessComponent
A
  • oxidoreductase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3kux.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (3kux.pdb2.gz) 111 Kb
  • Biological Unit Coordinates (3kux.pdb3.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 3KUX
  • CSU: Contacts of Structural Units for 3KUX
  • Structure Factors (286 Kb)
  • Retrieve 3KUX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KUX from S2C, [Save to disk]
  • Re-refined 3kux structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KUX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KUX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KUX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kux_A] [3kux]
  • SWISS-PROT database: [Q7CIK0]
  • Domain organization of [Q7CIK0_YERPE] by SWISSPFAM
    • Other resources with information on 3KUX
  • Community annotation for 3KUX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science