3L5J Immune System date Dec 22, 2009
title Crystal Structure Of Fniii Domains Of Human Gp130 (Domains 4
authors N.J.Kershaw, J.G.Zhang, T.P.J.Garrett, P.E.Czabotar
compound source
Molecule: Interleukin-6 Receptor Subunit Beta
Chain: A, B
Fragment: Unp Residues 323-610
Synonym: Il-6r-Beta, Interleukin-6 Signal Transducer, Membr Glycoprotein 130, Gp130, Cdw130, Oncostatin-M Receptor Subu
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gp130
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Duet
symmetry Space Group: C 1 2 1
R_factor 0.213 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.936 89.221 106.877 90.00 117.72 90.00
method X-Ray Diffractionresolution 3.04 Å
ligand CL, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the entire ectodomain of gp130: insights into the molecular assembly of the tall cytokine receptor complexes., Xu Y, Kershaw NJ, Luo CS, Soo P, Pocock MJ, Czabotar PE, Hilton DJ, Nicola NA, Garrett TP, Zhang JG, J Biol Chem. 2010 Jul 9;285(28):21214-8. Epub 2010 May 20. PMID:20489211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3l5j.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3l5j.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3L5J
  • CSU: Contacts of Structural Units for 3L5J
  • Structure Factors (388 Kb)
  • Retrieve 3L5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L5J from S2C, [Save to disk]
  • Re-refined 3l5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L5J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L5J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l5j_A] [3l5j_B] [3l5j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3L5J: [FN3 ] by SMART
  • Other resources with information on 3L5J
  • Community annotation for 3L5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science