3L5K Hydrolase date Dec 22, 2009
title The Crystal Structure Of Human Haloacid Dehalogenase-Like Hy Domain Containing 1a (Hdhd1a)
authors E.Ugochukwu, K.Guo, S.Picaud, J.Muniz, C.Allerston, F.Von Delft, C C.H.Arrowsmith, J.Weigelt, A.Edwards, W.W.Yue, K.L.Kavanagh, U.O Structural Genomics Consortium (Sgc)
compound source
Molecule: Haloacid Dehalogenase-Like Hydrolase Domain-Conta Protein 1a;
Chain: A
Synonym: Protein Gs1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hdhd1a
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31 2 1
R_factor 0.165 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.190 85.190 103.030 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, GOL, K enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • phosphatase activity
  • pseudouridine 5'-phosphatase...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3l5k.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3L5K
  • CSU: Contacts of Structural Units for 3L5K
  • Structure Factors (425 Kb)
  • Retrieve 3L5K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L5K from S2C, [Save to disk]
  • Re-refined 3l5k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L5K in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L5K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L5K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l5k_A] [3l5k]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3L5K
  • Community annotation for 3L5K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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