3L5Z Transcription Regulator date Dec 22, 2009
title Crystal Structure Of Transcriptional Regulator, Gntr Family Bacillus Cereus
authors C.Chang, C.Hatzos, B.Feldmann, S.Clancy, A.Joachimiak, Midwest Ce Structural Genomics (Mcsg)
compound source
Molecule: Transcriptional Regulator, Gntr Family
Chain: A, B
Engineered: Yes
 Organism_scientific: Bacillus Cereus
Organism_taxid: 222523
Strain: Atcc 10987
Gene: Bce_3424
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 41 21 2
R_factor 0.204 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.191 121.191 114.693 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand EDO, MSE, PG5 enzyme
Gene BCE
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3l5z.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3L5Z
  • CSU: Contacts of Structural Units for 3L5Z
  • Structure Factors (476 Kb)
  • Retrieve 3L5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L5Z from S2C, [Save to disk]
  • Re-refined 3l5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L5Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L5Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l5z_A] [3l5z_B] [3l5z]
  • SWISS-PROT database: [Q734I1]
  • Domain organization of [Q734I1_BACC1] by SWISSPFAM
  • Domain found in 3L5Z: [UTRA ] by SMART
    • Other resources with information on 3L5Z
  • Community annotation for 3L5Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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