3L6E Oxidoreductase date Dec 23, 2009
title Crystal Structure Of Putative Short Chain Dehydrogenaseredu Family Oxidoreductase From Aeromonas Hydrophila Subsp. Hydr Atcc 7966
authors V.N.Malashkevich, Y.Patskovsky, R.Toro, J.M.Sauder, S.K.Burley, S New York Sgx Research Center For Structural Genomics (Nysgx
compound source
Molecule: Oxidoreductase, Short-Chain Dehydrogenasereducta
Chain: A, B
Engineered: Yes
 Organism_scientific: Aeromonas Hydrophila Subsp. Hydrophila
Organism_taxid: 380703
Strain: Atcc 7966
Gene: Abk37325.1, Aha_3651
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 21 21 2
R_factor 0.219 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.363 53.005 67.019 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE, SO4 enzyme
Gene AHA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3l6e.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3l6e.pdb2.gz) 129 Kb
  • Biological Unit Coordinates (3l6e.pdb3.gz) 66 Kb
  • Biological Unit Coordinates (3l6e.pdb4.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3L6E
  • CSU: Contacts of Structural Units for 3L6E
  • Structure Factors (684 Kb)
  • Retrieve 3L6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L6E from S2C, [Save to disk]
  • Re-refined 3l6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L6E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L6E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l6e] [3l6e_B] [3l6e_A]
  • SWISS-PROT database: [A0KPA6]
  • Domain organization of [A0KPA6_AERHH] by SWISSPFAM
    • Other resources with information on 3L6E
  • Community annotation for 3L6E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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