3L82 Cell Cycle date Dec 29, 2009
title X-Ray Crystal Structure Of Trf1 And Fbx4 Complex
authors Z.X.Zeng, W.Wang, Y.T.Yang, Y.Chen, X.M.Yang, J.A.Diehl, X.D.Liu, M
compound source
Molecule: Telomeric Repeat-Binding Factor 1
Chain: A
Fragment: Dimerization Domain Residues 58-268
Synonym: Ttaggg Repeat-Binding Factor 1, Nima-Interacting P Telomeric Protein Pin2trf1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Terf1, Pin2, Trbf1, Trf, Trf1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1

Molecule: F-Box Only Protein 4
Chain: B
Fragment: F-Box Domain Residues 162-387
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fbxo4, Fbx4
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 43 21 2
R_factor 0.237 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.097 68.097 234.421 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of selective ubiquitination of TRF1 by SCFFbx4., Zeng Z, Wang W, Yang Y, Chen Y, Yang X, Diehl JA, Liu X, Lei M, Dev Cell. 2010 Feb 16;18(2):214-25. PMID:20159592
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3l82.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (3l82.pdb2.gz) 128 Kb
  • Biological Unit Coordinates (3l82.pdb3.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 3L82
  • CSU: Contacts of Structural Units for 3L82
  • Structure Factors (289 Kb)
  • Retrieve 3L82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L82 from S2C, [Save to disk]
  • Re-refined 3l82 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L82
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3L82, from MSDmotif at EBI
  • Fold representative 3l82 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l82] [3l82_A] [3l82_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3L82
  • Community annotation for 3L82 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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