OCA Atlas for 3L88

3L88

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, GOL, NA

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, G, H, K, J, L, B, D, A, C, I, F

Primary reference

Structure of adenovirus type 21 knob in complex with CD46 reveals key differences in receptor contacts among species B adenoviruses., Cupelli K, Muller S, Persson BD, Jost M, Arnberg N, Stehle T, J Virol. 2010 Apr;84(7):3189-200. Epub 2010 Jan 13. PMID:20071571

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]

Biological Unit Coordinates (3l88.pdb1.gz) 88 Kb

Biological Unit Coordinates (3l88.pdb2.gz) 88 Kb

Biological Unit Coordinates (3l88.pdb3.gz) 87 Kb

Biological Unit Coordinates (3l88.pdb4.gz) 87 Kb

LPC: Ligand-Protein Contacts for 3L88

CSU: Contacts of Structural Units for 3L88

Structure Factors (584 Kb)

Retrieve 3L88 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3L88 from S2C, [Save to disk]

Re-refined 3l88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3L88 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l88] [3l88_A] [3l88_B] [3l88_C] [3l88_D] [3l88_E] [3l88_F] [3l88_G] [3l88_H] [3l88_I] [3l88_J] [3l88_K] [3l88_L]

SWISS-PROT database:

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