3LCO	Transferase	date	Jan 11, 2010
title	Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain
authors	S.Kamtekar, J.E.Day, B.A.Reitz, K.J.Mathis, M.J.Meyers
compound		source
Molecule: Macrophage Colony-Stimulating Factor 1 Receptor Chain: A Fragment: Kinase Domain Synonym: Csf-1-R, Proto-Oncogene C-Fms Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Csf-1r, Csf1r, Fms Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 43 21 2	R_factor 0.245 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.916 62.916 183.943 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.40 Å
ligand	LC0 BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-based drug design enables conversion of a DFG-in binding CSF-1R kinase inhibitor to a DFG-out binding mode., Meyers MJ, Pelc M, Kamtekar S, Day J, Poda GI, Hall MK, Michener ML, Reitz BA, Mathis KJ, Pierce BS, Parikh MD, Mischke DA, Long SA, Parlow JJ, Anderson DR, Thorarensen A, Bioorg Med Chem Lett. 2010 Mar 1;20(5):1543-7. Epub 2010 Jan 21. PMID:20137931

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk] Biological Unit Coordinates (3lco.pdb1.gz) 95 Kb LPC: Ligand-Protein Contacts for 3LCO CSU: Contacts of Structural Units for 3LCO Structure Factors (83 Kb) Retrieve 3LCO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LCO from S2C, [Save to disk] Re-refined 3lco structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LCO in 3D

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Visual 3D analysis of 3LCO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LCO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lco_A] [3lco] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3LCO: [TyrKc ] by SMART

Other resources with information on 3LCO

Community annotation for 3LCO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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