3LGD Hydrolase date Jan 20, 2010
title Crystal Structure Of Human Adenosine Deaminase Growth Factor Adenosine Deaminase Type 2 (Ada2)
authors A.V.Zavialov
compound source
Molecule: Adenosine Deaminase Cecr1
Chain: A, B
Synonym: Cat Eye Syndrome Critical Region Protein 1
Ec: 3.5.4.4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ada2, Cecr1, Cecr1ada2, Idgfl
Expression_system: Drosophila
Expression_system_taxid: 7215
Expression_system_vector_type: Prmha3, Ps2neo
Expression_system_plasmid: Prmha3-Ada2
symmetry Space Group: P 1
R_factor 0.185 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.212 73.099 80.662 113.38 94.18 92.16
method X-Ray Diffractionresolution 2.00 Å
ligand EDO, NAG, UNX, ZN enzyme Hydrolase E.C.3.5.4.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the growth factor activity of human adenosine deaminase ADA2., Zavialov AV, Yu X, Spillmann D, Lauvau G, Zavialov AV, J Biol Chem. 2010 Apr 16;285(16):12367-77. Epub 2010 Feb 9. PMID:20147294
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (3lgd.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 3LGD
  • CSU: Contacts of Structural Units for 3LGD
  • Structure Factors (1330 Kb)
  • Retrieve 3LGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LGD from S2C, [Save to disk]
  • Re-refined 3lgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LGD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LGD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lgd] [3lgd_B] [3lgd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LGD
  • Community annotation for 3LGD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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