3LGP	Hydrolase	date	Jan 21, 2010
title	Crystal Structure Of Catalytic Domain Of Tace With Benzimida Thienyl-Tartrate Based Inhibitor
authors	P.Orth
compound		source
Molecule: Disintegrin And Metalloproteinase Domain-Containi 17; Chain: A, B Synonym: Adam 17, Tnf-Alpha-Converting Enzyme, Tnf-Alpha Co Snake Venom-Like Protease; Ec: 3.4.24.86 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Adam17, Csvp, Tace Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
symmetry	Space Group: P 21 21 21	R_factor 0.201 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.344 76.618 103.506 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	50X, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24.86 BRENDA
Primary reference	Structure and activity relationships of tartrate-based TACE inhibitors., Li D, Popovici-Muller J, Belanger DB, Caldwell J, Dai C, David M, Girijavallabhan VM, Lavey BJ, Lee JF, Liu Z, Mazzola R, Rizvi R, Rosner KE, Shankar B, Spitler J, Ting PC, Vaccaro H, Yu W, Zhou G, Zhu Z, Niu X, Sun J, Guo Z, Orth P, Chen S, Kozlowski JA, Lundell DJ, Madison V, McKittrick B, Piwinski JJ, Shih NY, Shipps GW Jr, Siddiqui MA, Strickland CO, Bioorg Med Chem Lett. 2010 Aug 15;20(16):4812-5. Epub 2010 Jun 25. PMID:20638281

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (3lgp.pdb1.gz) 45 Kb Biological Unit Coordinates (3lgp.pdb2.gz) 44 Kb LPC: Ligand-Protein Contacts for 3LGP CSU: Contacts of Structural Units for 3LGP Structure Factors (1057 Kb) Retrieve 3LGP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LGP from S2C, [Save to disk] Re-refined 3lgp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LGP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3LGP

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3LGP, from MSDmotif at EBI Fold representative 3lgp from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lgp_A] [3lgp_B] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3LGP with the sequences similar proteins can be viewed for 3LGP's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3LGP

Community annotation for 3LGP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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