3LGP Hydrolase date Jan 21, 2010
title Crystal Structure Of Catalytic Domain Of Tace With Benzimida Thienyl-Tartrate Based Inhibitor
authors P.Orth
compound source
Molecule: Disintegrin And Metalloproteinase Domain-Containi 17;
Chain: A, B
Synonym: Adam 17, Tnf-Alpha-Converting Enzyme, Tnf-Alpha Co Snake Venom-Like Protease;
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.344 76.618 103.506 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 50X, ZN BindingDB enzyme Hydrolase E.C.3.4.24.86 BRENDA
Primary referenceStructure and activity relationships of tartrate-based TACE inhibitors., Li D, Popovici-Muller J, Belanger DB, Caldwell J, Dai C, David M, Girijavallabhan VM, Lavey BJ, Lee JF, Liu Z, Mazzola R, Rizvi R, Rosner KE, Shankar B, Spitler J, Ting PC, Vaccaro H, Yu W, Zhou G, Zhu Z, Niu X, Sun J, Guo Z, Orth P, Chen S, Kozlowski JA, Lundell DJ, Madison V, McKittrick B, Piwinski JJ, Shih NY, Shipps GW Jr, Siddiqui MA, Strickland CO, Bioorg Med Chem Lett. 2010 Aug 15;20(16):4812-5. Epub 2010 Jun 25. PMID:20638281
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3lgp.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3lgp.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3LGP
  • CSU: Contacts of Structural Units for 3LGP
  • Structure Factors (998 Kb)
  • Retrieve 3LGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LGP from S2C, [Save to disk]
  • Re-refined 3lgp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LGP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LGP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LGP, from MSDmotif at EBI
  • Fold representative 3lgp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lgp_A] [3lgp] [3lgp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LGP
  • Community annotation for 3LGP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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