3LI8 Signaling Protein date Jan 24, 2010
title Crystal Structure Of The Extracellular Domain Of The Putativ Histidine Kinase Mmhk1s-Z2
authors Z.Zhang, W.A.Hendrickson
compound source
Molecule: Hypothetical Sensory Transduction Histidine Kinas
Chain: A
Fragment: Extracellular Domain (Unp Residues 32-313)
Engineered: Yes
Organism_scientific: Methanosarcina Mazei
Organism_common: Methanosarcina Frisia
Organism_taxid: 2209
Strain: Dsm 3647
Gene: Mm_2955
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b+
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.456 87.693 99.002 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand EDO, MSE, SO4 enzyme
Gene MM
Primary referenceStructural characterization of the predominant family of histidine kinase sensor domains., Zhang Z, Hendrickson WA, J Mol Biol. 2010 Jul 16;400(3):335-53. Epub 2010 May 8. PMID:20435045
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3li8.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (3li8.pdb2.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 3LI8
  • CSU: Contacts of Structural Units for 3LI8
  • Structure Factors (718 Kb)
  • Retrieve 3LI8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LI8 from S2C, [Save to disk]
  • Re-refined 3li8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LI8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LI8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LI8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3li8] [3li8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LI8
  • Community annotation for 3LI8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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