3LMB Structural Genomics, Unknown Function date Jan 29, 2010
title The Crystal Structure Of The Protein Olei01261 With Unknown From Chlorobaculum Tepidum Tls
authors R.Zhang, E.Evdokimova, O.Egorova, A.Savchenko, A.Edwards, A.Joach Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Oleispira Antarctica Rb-8
Organism_taxid: 698738
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 21
R_factor 0.166 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.090 72.962 79.755 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE enzyme
note 3LMB is a representative structure
Primary referenceGenome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica., Kube M, Chernikova TN, Al-Ramahi Y, Beloqui A, Lopez-Cortez N, Guazzaroni ME, Heipieper HJ, Klages S, Kotsyurbenko OR, Langer I, Nechitaylo TY, Lunsdorf H, Fernandez M, Juarez S, Ciordia S, Singer A, Kagan O, Egorova O, Alain Petit P, Stogios P, Kim Y, Tchigvintsev A, Flick R, Denaro R, Genovese M, Albar JP, Reva ON, Martinez-Gomariz M, Tran H, Ferrer M, Savchenko A, Yakunin AF, Yakimov MM, Golyshina OV, Reinhardt R, Golyshin PN, Nat Commun. 2013 Jul 23;4:2156. doi: 10.1038/ncomms3156. PMID:23877221
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (3lmb.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3LMB
  • CSU: Contacts of Structural Units for 3LMB
  • Structure Factors (152 Kb)
  • Retrieve 3LMB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LMB from S2C, [Save to disk]
  • Re-refined 3lmb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LMB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LMB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LMB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lmb] [3lmb_A] [3lmb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3LMB
  • Community annotation for 3LMB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science