3LMG Transferase date Jan 30, 2010
title Crystal Structure Of The Erbb3 Kinase Domain In Complex With
authors F.Shi, M.A.Lemmon
compound source
Molecule: Receptor Tyrosine-Protein Kinase Erbb-3
Chain: A, B
Fragment: Tyrosine Kinase Domain (Unp Residues 684-1020)
Synonym: C-Erbb3, Tyrosine Kinase-Type Cell Surface Recepto
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erbb3, Her3
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: C 1 2 1
R_factor 0.252 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
193.348 47.981 82.224 90.00 108.11 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ANP, MG enzyme Transferase E.C.2.7.10.1 BRENDA
Primary referenceErbB3/HER3 intracellular domain is competent to bind ATP and catalyze autophosphorylation., Shi F, Telesco SE, Liu Y, Radhakrishnan R, Lemmon MA, Proc Natl Acad Sci U S A. 2010 Mar 29. PMID:20351256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3lmg.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3lmg.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3LMG
  • CSU: Contacts of Structural Units for 3LMG
  • Structure Factors (246 Kb)
  • Retrieve 3LMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LMG from S2C, [Save to disk]
  • Re-refined 3lmg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LMG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LMG, from MSDmotif at EBI
  • Fold representative 3lmg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lmg] [3lmg_A] [3lmg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LMG: [TyrKc ] by SMART
  • Alignments of the sequence of 3LMG with the sequences similar proteins can be viewed for 3LMG's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3LMG
  • Community annotation for 3LMG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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