3LRH Immune System date Feb 11, 2010
title Structure Of Anti-Huntingtin Vl Domain In Complex With Hunti Peptide
authors A.Schiefner, L.Chatwell, A.Skerra
compound source
Molecule: Anti-Huntingtin Vl Domain
Chain: A, C, E, G, I, K, M, O
Fragment: Anti-Huntingtin Vl Domain
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Strain: Phage Display Library Synthetic
Gene: Vl12.3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm83
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pask75(T7rbs)His

Molecule: Huntingtin
Chain: B, D, F, H, J, L, N, P
Fragment: Huntingtin Peptide
Synonym: Huntington Disease Protein, Hd Protein
Engineered: Yes
Synthetic: Yes
Other_details: The Huntingtin Fragment 5-18 Was Obtained By Synthesis. This Sequence Occurs Naturally In Humans.
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.090 89.660 95.000 90.00 99.45 90.00
method X-Ray Diffractionresolution 2.60 Å
Primary referenceA Disulfide-Free Single-Domain V(L) Intrabody with Blocking Activity towards Huntingtin Reveals a Novel Mode of Epitope Recognition., Schiefner A, Chatwell L, Korner J, Neumaier I, Colby DW, Volkmer R, Wittrup KD, Skerra A, J Mol Biol. 2011 Sep 24. PMID:21968397
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk]
  • Biological Unit Coordinates (3lrh.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3lrh.pdb2.gz) 41 Kb
  • Biological Unit Coordinates (3lrh.pdb3.gz) 42 Kb
  • Biological Unit Coordinates (3lrh.pdb4.gz) 41 Kb
  • Biological Unit Coordinates (3lrh.pdb5.gz) 40 Kb
  • Biological Unit Coordinates (3lrh.pdb6.gz) 41 Kb
  • Biological Unit Coordinates (3lrh.pdb7.gz) 41 Kb
  • Biological Unit Coordinates (3lrh.pdb8.gz) 41 Kb
  • CSU: Contacts of Structural Units for 3LRH
  • Structure Factors (404 Kb)
  • Retrieve 3LRH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LRH from S2C, [Save to disk]
  • Re-refined 3lrh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LRH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LRH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LRH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lrh_P] [3lrh_B] [3lrh_K] [3lrh_C] [3lrh] [3lrh_G] [3lrh_M] [3lrh_E] [3lrh_N] [3lrh_A] [3lrh_J] [3lrh_F] [3lrh_L] [3lrh_H] [3lrh_I] [3lrh_O] [3lrh_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LRH: [IGv ] by SMART
    • Other resources with information on 3LRH
  • Community annotation for 3LRH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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