3LY6 Transferase date Feb 26, 2010
title Crystal Structure Of Human Transglutaminase 2 Complex With A 5' Triphosphate
authors B.G.Han, B.I.Lee
compound source
Molecule: Protein-Glutamine Gamma-Glutamyltransferase 2
Chain: A, B, C
Synonym: Tgm2, Tissue Transglutaminase, Tgase C, Tgc, Tg(C) Transglutaminase-2, Tgase-H;
Ec: 2.3.2.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32 (Novagen)
symmetry Space Group: C 2 2 21
R_factor 0.233 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.175 215.759 165.956 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.14 Å
ligand ATP enzyme Transferase E.C.2.3.2.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • negative regulation of endop...

  • Primary referenceCrystal structure of human transglutaminase 2 in complex with adenosine triphosphate., Han BG, Cho JW, Cho YD, Jeong KC, Kim SY, Lee BI, Int J Biol Macromol. 2010 Aug 1;47(2):190-5. Epub 2010 May 5. PMID:20450932
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (3ly6.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (3ly6.pdb2.gz) 102 Kb
  • Biological Unit Coordinates (3ly6.pdb3.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 3LY6
  • CSU: Contacts of Structural Units for 3LY6
  • Structure Factors (434 Kb)
  • Retrieve 3LY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LY6 from S2C, [Save to disk]
  • Re-refined 3ly6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LY6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LY6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ly6] [3ly6_A] [3ly6_C] [3ly6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LY6: [TGc ] by SMART
  • Other resources with information on 3LY6
  • Community annotation for 3LY6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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