3MJH	Protein Transport	date	Apr 12, 2010
title	Crystal Structure Of Human Rab5a In Complex With The C2h2 Zi Of Eea1
authors	A.K.Mishra, S.Eathiraj, D.G.Lambright
compound		source
Molecule: Ras-Related Protein Rab-5a Chain: A, C Fragment: Residues 16-183 Ec: 3.6.5.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab5, Rab5a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: K12, Bl21 (De3)Codon Plus Ril Cel Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet15b, Modified Pet28a
Molecule: Early Endosome Antigen 1 Chain: B, D Fragment: C2h2-Type, Residues 36-69 Synonym: Endosome-Associated Protein P162, Zinc Finger Fyve Containing Protein 2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Early Endosomal Antigen1(Eea1), Eea1, Zfyve2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: K12, Bl21(De3)Codon Plus Ril Cell Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.412 80.398 103.495 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.03 Å
ligand	GTP, MG, ZN	enzyme	Hydrolase E.C.3.6.5.2 BRENDA
note	3MJH is a representative structure
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structural basis for Rab GTPase recognition and endosome tethering by the C2H2 zinc finger of Early Endosomal Autoantigen 1 (EEA1)., Mishra A, Eathiraj S, Corvera S, Lambright DG, Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10866-71. Epub 2010 Jun 1. PMID:20534488

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (3mjh.pdb1.gz) 37 Kb Biological Unit Coordinates (3mjh.pdb2.gz) 36 Kb LPC: Ligand-Protein Contacts for 3MJH CSU: Contacts of Structural Units for 3MJH Structure Factors (127 Kb) Retrieve 3MJH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MJH from S2C, [Save to disk] Re-refined 3mjh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MJH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MJH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MJH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mjh_A] [3mjh_B] [3mjh_C] [3mjh_D] [3mjh] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3MJH: [RAB] [ZnF_C2H2 ] by SMART

Other resources with information on 3MJH

Community annotation for 3MJH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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