3N0T	Hydrolase	date	May 14, 2010
title	Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor Gsk
authors	E.Dobrovetsky, G.Khutoreskaya, A.Seitova, L.Crombet, D.Cossar, S. C.H.Arrowsmith, C.Bountra, J.Weigelt, A.M.Edwards, A.Hassell, L. C.Haffner, A.Bochkarev, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Dipeptidyl Peptidase 2 Chain: A, B, C, D Fragment: Peptidase Domain (Unp Residues 28-492) Synonym: Dipeptidyl Peptidase II, Dpp II, Dipeptidyl Aminop II, Quiescent Cell Proline Dipeptidase, Dipeptidyl Peptidas Ec: 3.4.14.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dpp2, Dpp7, Qpp Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.219 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.546 130.500 125.075 90.00 102.28 90.00
method	X-Ray Diffraction	resolution	2.45 Å
ligand	OPY BindingDB	enzyme	Hydrolase E.C.3.4.14.2 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (568 Kb) [Save to disk] Biological Unit Coordinates (3n0t.pdb1.gz) 283 Kb Biological Unit Coordinates (3n0t.pdb2.gz) 283 Kb LPC: Ligand-Protein Contacts for 3N0T CSU: Contacts of Structural Units for 3N0T Structure Factors (2089 Kb) Retrieve 3N0T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3N0T from S2C, [Save to disk] Re-refined 3n0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3N0T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3N0T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3N0T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3n0t] [3n0t_C] [3n0t_D] [3n0t_A] [3n0t_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3N0T

Community annotation for 3N0T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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