3NBY Gtp-Binding Protein Transport Protein date Jun 04, 2010
title Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export
authors T.Guttler, T.Madl, P.Neumann, D.Deichsel, L.Corsini, T.Monecke, R. M.Sattler, D.Gorlich
compound source
Molecule: Snurportin-1
Chain: B, E
Synonym: Rna U Transporter 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkia (Geneid: 5569) Snupn (Geneid: 10073), Rnut1, Snu
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Blr
Expression_system_vector_type: Plasmid

Molecule: Gtp-Binding Nuclear Protein Ran
Chain: C, F
Synonym: Gtpase Ran, Ras-Related Nuclear Protein, Ras-Like Tc4, Androgen Receptor-Associated Protein 24;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ara24, Oksw-Cl.81, Ran, Ran (Geneid: 5901)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Blr
Expression_system_vector_type: Plasmid

Molecule: Exportin-1
Chain: A, D
Synonym: Exp1, Chromosome Region Maintenance 1 Protein Homo
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Crm1, Xpo1, Xpo1 (Geneid: 103573)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Blr
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.258 R_Free 0.315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.090 223.726 163.064 90.00 100.63 90.00
method X-Ray Diffractionresolution 3.42 Å
ligand GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


F, C


Primary referenceNES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1., Guttler T, Madl T, Neumann P, Deichsel D, Corsini L, Monecke T, Ficner R, Sattler M, Gorlich D, Nat Struct Mol Biol. 2010 Oct 24. PMID:20972448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (496 Kb) [Save to disk]
  • Biological Unit Coordinates (3nby.pdb1.gz) 248 Kb
  • Biological Unit Coordinates (3nby.pdb2.gz) 248 Kb
  • LPC: Ligand-Protein Contacts for 3NBY
  • CSU: Contacts of Structural Units for 3NBY
  • Structure Factors (873 Kb)
  • Retrieve 3NBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NBY from S2C, [Save to disk]
  • Re-refined 3nby structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NBY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NBY, from MSDmotif at EBI
  • Fold representative 3nby from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nby] [3nby_B] [3nby_F] [3nby_E] [3nby_C] [3nby_D] [3nby_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3NBY: [CRM1_C] [IBN_N] [RAN ] by SMART
  • Other resources with information on 3NBY
  • Community annotation for 3NBY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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