3NMZ Cell Adhesion Cell Cycle date Jun 23, 2010
title Crytal Structure Of Apc Complexed With Asef
authors Z.Zhang, L.Chen, L.Gao, K.Lin, G.Wu
compound source
Molecule: Apc Variant Protein
Chain: A, B
Fragment: Armadiilo Repeats Domain
Synonym: Adenomatous Polyposis Coli
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apc Variant Protein
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Rho Guanine Nucleotide Exchange Factor 4
Chain: D, C
Fragment: Unp Residues 170-276
Synonym: Apc-Stimulated Guanine Nucleotide Exchange Factor,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arhgef4, Kiaa1112
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: H 3
R_factor 0.249 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.175 163.175 242.593 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.01 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (333 Kb) [Save to disk]
  • Biological Unit Coordinates (3nmz.pdb1.gz) 326 Kb
  • Biological Unit Coordinates (3nmz.pdb2.gz) 165 Kb
  • Biological Unit Coordinates (3nmz.pdb3.gz) 164 Kb
  • CSU: Contacts of Structural Units for 3NMZ
  • Structure Factors (700 Kb)
  • Retrieve 3NMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NMZ from S2C, [Save to disk]
  • Re-refined 3nmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NMZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NMZ, from MSDmotif at EBI
  • Fold representative 3nmz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nmz_D] [3nmz] [3nmz_B] [3nmz_C] [3nmz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3NMZ: [ARM] [SH3 ] by SMART
  • Other resources with information on 3NMZ
  • Community annotation for 3NMZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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