3NMZ Cell Adhesion Cell Cycle date Jun 23, 2010
title Crytal Structure Of Apc Complexed With Asef
authors Z.Zhang, L.Chen, L.Gao, K.Lin, G.Wu
compound source
Molecule: Apc Variant Protein
Chain: A, B
Fragment: Armadiilo Repeats Domain
Synonym: Adenomatous Polyposis Coli
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apc Variant Protein
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Rho Guanine Nucleotide Exchange Factor 4
Chain: D, C
Fragment: Unp Residues 170-276
Synonym: Apc-Stimulated Guanine Nucleotide Exchange Factor,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arhgef4, Kiaa1112
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: H 3
R_factor 0.249 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.175 163.175 242.593 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.01 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (333 Kb) [Save to disk]
  • Biological Unit Coordinates (3nmz.pdb1.gz) 326 Kb
  • Biological Unit Coordinates (3nmz.pdb2.gz) 165 Kb
  • Biological Unit Coordinates (3nmz.pdb3.gz) 164 Kb
  • CSU: Contacts of Structural Units for 3NMZ
  • Structure Factors (700 Kb)
  • Retrieve 3NMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NMZ from S2C, [Save to disk]
  • Re-refined 3nmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NMZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NMZ, from MSDmotif at EBI
  • Fold representative 3nmz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nmz_D] [3nmz] [3nmz_B] [3nmz_C] [3nmz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3NMZ with the sequences similar proteins can be viewed for 3NMZ's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3NMZ
  • Community annotation for 3NMZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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