3NY2	Ligase	date	Jul 14, 2010
title	Structure Of The Ubr-Box Of Ubr2 Ubiquitin Ligase
authors	E.Matta-Camacho, G.Kozlov, F.Li, K.Gehring
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Ubr2 Chain: A, B, C, D, E, F, G, H Fragment: Ubr-Box Synonym: N-Recognin-2, Ubiquitin-Protein Ligase E3-Alpha-2, Ubiquitin-Protein Ligase E3-Alpha-II; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubr2, C6orf133, Kiaa0349 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: P 1	R_factor 0.230 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 29.390 61.456 72.806 65.05 89.98 90.01
method	X-Ray Diffraction	resolution	2.61 Å
ligand	ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Structural basis of substrate recognition and specificity in the N-end rule pathway., Matta-Camacho E, Kozlov G, Li FF, Gehring K, Nat Struct Mol Biol. 2010 Oct;17(10):1182-7. Epub 2010 Sep 12. PMID:20835242

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (3ny2.pdb1.gz) 13 Kb Biological Unit Coordinates (3ny2.pdb2.gz) 13 Kb Biological Unit Coordinates (3ny2.pdb3.gz) 12 Kb Biological Unit Coordinates (3ny2.pdb4.gz) 13 Kb Biological Unit Coordinates (3ny2.pdb5.gz) 12 Kb Biological Unit Coordinates (3ny2.pdb6.gz) 13 Kb Biological Unit Coordinates (3ny2.pdb7.gz) 13 Kb Biological Unit Coordinates (3ny2.pdb8.gz) 13 Kb LPC: Ligand-Protein Contacts for 3NY2 CSU: Contacts of Structural Units for 3NY2 Structure Factors (205 Kb) Retrieve 3NY2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NY2 from S2C, [Save to disk] Re-refined 3ny2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NY2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3NY2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3NY2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ny2_H] [3ny2_D] [3ny2_G] [3ny2_C] [3ny2_F] [3ny2_B] [3ny2] [3ny2_A] [3ny2_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3NY2: [ZnF_UBR1 ] by SMART

Other resources with information on 3NY2

Community annotation for 3NY2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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