3NZ4 Lyase date Jul 16, 2010
title Crystal Structure Of A Taxus Phenylalanine Aminomutase
authors L.Feng, J.H.Geiger
compound source
Molecule: Phenylalanine Ammonia-Lyase
Chain: A, B
Ec: 4.3.1.24
Engineered: Yes
Organism_scientific: Taxus Canadensis
Organism_common: Canada Yew, Ground-Hemlock
Organism_taxid: 88032
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.733 76.113 120.392 90.00 120.43 90.00
method X-Ray Diffractionresolution 2.38 Å
ligand MDO, TCA enzyme Lyase E.C.4.3.1.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanistic, Mutational, and Structural Evaluation of a Taxus Phenylalanine Aminomutase., Feng L, Wanninayake U, Strom S, Geiger J, Walker KD, Biochemistry. 2011 Mar 21. PMID:21361343
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (422 Kb) [Save to disk]
  • Biological Unit Coordinates (3nz4.pdb1.gz) 415 Kb
  • Biological Unit Coordinates (3nz4.pdb2.gz) 829 Kb
  • LPC: Ligand-Protein Contacts for 3NZ4
  • CSU: Contacts of Structural Units for 3NZ4
  • Structure Factors (648 Kb)
  • Retrieve 3NZ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NZ4 from S2C, [Save to disk]
  • Re-refined 3nz4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NZ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NZ4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NZ4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nz4_B] [3nz4] [3nz4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NZ4
  • Community annotation for 3NZ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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