3OD5	Hydrolase Hydrolase Inhibitor	date	Aug 11, 2010
title	Crystal Structure Of Active Caspase-6 Bound With Ac-Veid-Cho
authors	X.J.Wang, X.Liu, K.T.Wang, Q.Cao, X.D.Su
compound		source
Molecule: Caspase-6 Chain: A, B Synonym: Casp-6, Apoptotic Protease Mch-2, Caspase-6 Subuni Caspase-6 Subunit P11; Ec: 3.4.22.59 Engineered: Yes Other_details: Delta-Prodomain; Caspase-6 Subunit P18caspa Subunit P11;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
Molecule: Peptide Aldehyde Inhibitor Ac-Veid-Cho Chain: C, D Engineered: Yes		Synthetic: Yes Other_details: Ligand Molecule Synthesized
symmetry	Space Group: P 1 21 1	R_factor 0.155 R_Free 0.189
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.464 89.589 61.145 90.00 111.67 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	ACE, ASA, CAC	enzyme	Hydrolase E.C.3.4.22.59 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of human caspase 6 reveal a new mechanism for intramolecular cleavage self-activation., Wang XJ, Cao Q, Liu X, Wang KT, Mi W, Zhang Y, Li LF, Leblanc AC, Su XD, EMBO Rep. 2010 Oct 1. PMID:20890311

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk] Biological Unit Coordinates (3od5.pdb1.gz) 85 Kb Biological Unit Coordinates (3od5.pdb2.gz) 85 Kb LPC: Ligand-Protein Contacts for 3OD5 CSU: Contacts of Structural Units for 3OD5 Structure Factors (699 Kb) Retrieve 3OD5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OD5 from S2C, [Save to disk] Re-refined 3od5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OD5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OD5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OD5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3od5_C] [3od5] [3od5_A] [3od5_D] [3od5_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3OD5: [CASc ] by SMART

Other resources with information on 3OD5

Community annotation for 3OD5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---