3OE8	Signaling Protein, Hydrolase	date	Aug 12, 2010
title	Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex Small Molecule Antagonist It1t In P1 Spacegroup
authors	B.Wu, C.D.Mol, G.W.Han, V.Katritch, E.Y.T.Chien, W.Liu, V.Cherezov R.C.Stevens, Accelerated Technologies Center For Gene To 3d (Atcg3d), Gpcr Network (Gpcr)
compound		source
Molecule: C-X-C Chemokine Receptor Type 4, Lysozyme Chimera Chain: A, B, C Fragment: Cxcr4 Residues 2-229, Lysozyme Residues 1002-1161 Residues 230-319; Synonym: Cxc-R4, Cxcr-4, Stromal Cell-Derived Factor 1 Rece Receptor, Fusin, Leukocyte-Derived Seven Transmembrane Do Receptor, Lestr, Lcr1, Fb22, Npyrl, Hm89, Lysis Protein, Mu Endolysin; Ec: 3.2.1.17 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens, Enterobacteria Phage T4 Organism_taxid: 9606, 10665 Gene: Cxcr4, Cxcr4_human,E Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Bacmid Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 1	R_factor 0.250 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.369 76.602 91.719 96.00 97.78 97.38
method	X-Ray Diffraction	resolution	3.10 Å
ligand	ITD BindingDB	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene	CXCR4 (H. sapiens)
Gene Ontology	Chain Function Process Component A, C, B
Disease	Myelokathexis, isolated OMIM:162643 WHIM syndrome OMIM:162643
Primary reference	Structures of the CXCR4 Chemokine GPCR with Small-Molecule and Cyclic Peptide Antagonists., Wu B, Chien EY, Mol CD, Fenalti G, Liu W, Katritch V, Abagyan R, Brooun A, Wells P, Bi FC, Hamel DJ, Kuhn P, Handel TM, Cherezov V, Stevens RC, Science. 2010 Oct 7. PMID:20929726

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk] Biological Unit Coordinates (3oe8.pdb1.gz) 289 Kb Biological Unit Coordinates (3oe8.pdb2.gz) 432 Kb Biological Unit Coordinates (3oe8.pdb3.gz) 147 Kb LPC: Ligand-Protein Contacts for 3OE8 CSU: Contacts of Structural Units for 3OE8 Structure Factors (612 Kb) Retrieve 3OE8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OE8 from S2C, [Save to disk] Re-refined 3oe8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OE8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OE8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OE8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oe8_C] [3oe8_B] [3oe8_A] [3oe8] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OE8

Community annotation for 3OE8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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