3OP5	Transferase	date	Aug 31, 2010
title	Human Vaccinia-Related Kinase 1
authors	C.K.Allerston, S.Uttarkar, P.Savitsky, J.M.Elkins, P.Filippakopo T.Krojer, P.Rellos, O.Fedorov, J.Eswaran, B.Brenner, T.Keates, S. O.King, R.Chalk, G.Berridge, F.Von Delft, O.Gileadi, C.H.Arrowsm A.M.Edwards, J.Weigelt, C.Bountra, S.Knapp, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Serinethreonine-Protein Kinase Vrk1 Chain: A, B, C, D Fragment: Kinase Domain, Residues 3-369 Synonym: Vaccinia-Related Kinase 1 Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vrk1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-R3-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.970 97.190 191.990 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	EDO, GOL, REB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural characterization of human Vaccinia-Related Kinases (VRK) bound to small-molecule inhibitors identifies different P-loop conformations., Counago RM, Allerston CK, Savitsky P, Azevedo H, Godoi PH, Wells CI, Mascarello A, de Souza Gama FH, Massirer KB, Zuercher WJ, Guimaraes CRW, Gileadi O, Sci Rep. 2017 Aug 8;7(1):7501. doi: 10.1038/s41598-017-07755-y. PMID:28790404

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (428 Kb) [Save to disk] Biological Unit Coordinates (3op5.pdb1.gz) 110 Kb Biological Unit Coordinates (3op5.pdb2.gz) 112 Kb Biological Unit Coordinates (3op5.pdb3.gz) 107 Kb Biological Unit Coordinates (3op5.pdb4.gz) 104 Kb LPC: Ligand-Protein Contacts for 3OP5 CSU: Contacts of Structural Units for 3OP5 Structure Factors (1427 Kb) Retrieve 3OP5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OP5 from S2C, [Save to disk] Re-refined 3op5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OP5 in 3D

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Visual 3D analysis of 3OP5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OP5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3op5_D] [3op5_C] [3op5_A] [3op5] [3op5_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3OP5: [STYKc ] by SMART

Other resources with information on 3OP5

Community annotation for 3OP5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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