3OQ5	Transcription	date	Sep 02, 2010
title	Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1 In With P53k382me1
authors	S.Roy, L.E.West, K.L.Weiner, R.Hayashi, X.Shi, E.Appella, O.Gozani T.Kutateladze
compound		source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein Chain: A, B, C Fragment: Mbt Repeats Residues 191-530 Synonym: L(3)Mbt-Like, H-L(3)Mbt Protein, H-L(3)Mbt, L(3)Mb Homolog, L3mbtl1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: L3mbtl, Kiaa0681, L3mbt, L3mbtl1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Pgex6p1
Molecule: Cellular Tumor Antigen P53 Chain: D, E Fragment: C-Terminal Residues 377-386 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 Other_details: Synthetic Construct
symmetry	Space Group: P 32	R_factor 0.205 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.080 109.080 90.050 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	MLZ	enzyme
Primary reference	The MBT repeats of L3MBTL1 link set8 mediated p53 methylation at lysine 382 to target gene repression., West LE, Roy S, Lachmi-Weiner K, Hayashi R, Shi X, Appella E, Kutateladze TG, Gozani O, J Biol Chem. 2010 Sep 24. PMID:20870725

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk] Biological Unit Coordinates (3oq5.pdb1.gz) 56 Kb Biological Unit Coordinates (3oq5.pdb2.gz) 56 Kb Biological Unit Coordinates (3oq5.pdb3.gz) 57 Kb LPC: Ligand-Protein Contacts for 3OQ5 CSU: Contacts of Structural Units for 3OQ5 Structure Factors (289 Kb) Retrieve 3OQ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OQ5 from S2C, [Save to disk] Re-refined 3oq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OQ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3OQ5

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3OQ5, from MSDmotif at EBI Fold representative 3oq5 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oq5_A] [3oq5_B] [3oq5_C] [3oq5_D] [3oq5_E] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3OQ5 with the sequences similar proteins can be viewed for 3OQ5's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3OQ5

Community annotation for 3OQ5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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