3OQ5 Transcription date Sep 02, 2010
title Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1 In With P53k382me1
authors S.Roy, L.E.West, K.L.Weiner, R.Hayashi, X.Shi, E.Appella, O.Gozani T.Kutateladze
compound source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein
Chain: A, B, C
Fragment: Mbt Repeats Residues 191-530
Synonym: L(3)Mbt-Like, H-L(3)Mbt Protein, H-L(3)Mbt, L(3)Mb Homolog, L3mbtl1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: L3mbtl, Kiaa0681, L3mbt, L3mbtl1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Pgex6p1

Molecule: Cellular Tumor Antigen P53
Chain: D, E
Fragment: C-Terminal Residues 377-386
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Other_details: Synthetic Construct
symmetry Space Group: P 32
R_factor 0.205 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.080 109.080 90.050 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand MLZ enzyme
Primary referenceThe MBT repeats of L3MBTL1 link set8 mediated p53 methylation at lysine 382 to target gene repression., West LE, Roy S, Lachmi-Weiner K, Hayashi R, Shi X, Appella E, Kutateladze TG, Gozani O, J Biol Chem. 2010 Sep 24. PMID:20870725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (3oq5.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (3oq5.pdb2.gz) 56 Kb
  • Biological Unit Coordinates (3oq5.pdb3.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3OQ5
  • CSU: Contacts of Structural Units for 3OQ5
  • Structure Factors (289 Kb)
  • Retrieve 3OQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OQ5 from S2C, [Save to disk]
  • Re-refined 3oq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OQ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OQ5, from MSDmotif at EBI
  • Fold representative 3oq5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oq5_C] [3oq5_B] [3oq5_E] [3oq5_D] [3oq5] [3oq5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OQ5: [MBT ] by SMART
  • Alignments of the sequence of 3OQ5 with the sequences similar proteins can be viewed for 3OQ5's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3OQ5
  • Community annotation for 3OQ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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