3OQ5 Transcription date Sep 02, 2010
title Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1 In With P53k382me1
authors S.Roy, L.E.West, K.L.Weiner, R.Hayashi, X.Shi, E.Appella, O.Gozani T.Kutateladze
compound source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein
Chain: A, B, C
Fragment: Mbt Repeats Residues 191-530
Synonym: L(3)Mbt-Like, H-L(3)Mbt Protein, H-L(3)Mbt, L(3)Mb Homolog, L3mbtl1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: L3mbtl, Kiaa0681, L3mbt, L3mbtl1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Pgex6p1

Molecule: Cellular Tumor Antigen P53
Chain: D, E
Fragment: C-Terminal Residues 377-386
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Other_details: Synthetic Construct
symmetry Space Group: P 32
R_factor 0.205 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.080 109.080 90.050 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand MLZ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe MBT repeats of L3MBTL1 link set8 mediated p53 methylation at lysine 382 to target gene repression., West LE, Roy S, Lachmi-Weiner K, Hayashi R, Shi X, Appella E, Kutateladze TG, Gozani O, J Biol Chem. 2010 Sep 24. PMID:20870725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (3oq5.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (3oq5.pdb2.gz) 56 Kb
  • Biological Unit Coordinates (3oq5.pdb3.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3OQ5
  • CSU: Contacts of Structural Units for 3OQ5
  • Structure Factors (289 Kb)
  • Retrieve 3OQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OQ5 from S2C, [Save to disk]
  • Re-refined 3oq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OQ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OQ5, from MSDmotif at EBI
  • Fold representative 3oq5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oq5_C] [3oq5_B] [3oq5_E] [3oq5_D] [3oq5] [3oq5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OQ5: [MBT ] by SMART
  • Other resources with information on 3OQ5
  • Community annotation for 3OQ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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