3OYM	Recombination,Viral Protein Dna	date	Sep 23, 2010
title	Crystal Structure Of The Pfv N224h Mutant Intasome Bound To
authors	S.Hare, P.Cherepanov
compound		source
Molecule: Pfv Integrase Chain: A, B Fragment: Unp Residues 752 To 1143 Synonym: P42in Engineered: Yes		Organism_scientific: Human Spumaretrovirus Organism_common: Sfvcpz(Hu) Organism_taxid: 11963 Strain: Hsrv2 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Pc2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pssh6p-Pfv-Infl
Molecule: Dna (5'- D(Aptptpgptpcpaptpgpgpapaptptptpcpgpcpa) Chain: C Engineered: Yes Other_details: 19 Nucleotide Preprocessed Pfv Donor Dna (No Transferred Strand);		Synthetic: Yes Other_details: Donor Dna Non-Transferred Strand
Molecule: Dna (5'- D(Tpgpcpgpapapaptptpcpcpaptpgpapcpa)-3'); Chain: D Engineered: Yes Other_details: 17 Nucleotide Preprocessed Pfv Donor Dna (Tr Strand)		Synthetic: Yes Other_details: Donor Dna Transferred Strand
symmetry	Space Group: P 41 21 2	R_factor 0.197 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 158.050 158.050 122.160 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.02 Å
ligand	GOL, HEZ, MN, NH4, SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Molecular mechanisms of retroviral integrase inhibition and the evolution of viral resistance., Hare S, Vos AM, Clayton RF, Thuring JW, Cummings MD, Cherepanov P, Proc Natl Acad Sci U S A. 2010 Oct 28. PMID:21030679

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (3oym.pdb1.gz) 229 Kb LPC: Ligand-Protein Contacts for 3OYM CSU: Contacts of Structural Units for 3OYM Structure Factors (1408 Kb) Retrieve 3OYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OYM from S2C, [Save to disk] Re-refined 3oym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OYM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OYM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oym_B] [3oym_D] [3oym] [3oym_C] [3oym_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OYM

Community annotation for 3OYM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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