OCA Atlas for 3P1Z

3P1Z

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene

APE

Gene
Ontology

Chain	Function	Process	Component
H, D, F, L, J, B	tRNA-intron endonuclease act... nuclease activity
I, E, A, K, G, C	tRNA-intron endonuclease act... nuclease activity

Primary reference

Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop., Hirata A, Kitajima T, Hori H, Nucleic Acids Res. 2011 Nov;39(21):9376-89. Epub 2011 Aug 16. PMID:21846775

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (335 Kb) [Save to disk]

Biological Unit Coordinates (3p1z.pdb1.gz) 114 Kb

Biological Unit Coordinates (3p1z.pdb2.gz) 114 Kb

Biological Unit Coordinates (3p1z.pdb3.gz) 113 Kb

CSU: Contacts of Structural Units for 3P1Z

Structure Factors (938 Kb)

Retrieve 3P1Z in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3P1Z from S2C, [Save to disk]

Re-refined 3p1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P1Z in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p1z] [3p1z_A] [3p1z_B] [3p1z_C] [3p1z_D] [3p1z_E] [3p1z_F] [3p1z_G] [3p1z_H] [3p1z_I] [3p1z_J] [3p1z_K] [3p1z_L]

SWISS-PROT database:

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